I may have asked this question before, and been sent to the stake! If so, please disregard, and call me names

We are prepping for the large v10 upgrade (from 901.13), and the request we have is:
"For follow-up with the technical team, the requirement that all Lawson COBOL programs be “in” the Application Management Toolkit (AMT). So our custom programs for Lawson need to be added if not already."
Based on this request - it is to essentially make sure that we are capturing all of our Custom code, and if it is possibly, somehow, to get custom code "in" AMT? Does this make sense to anyone? Or, are there ways to make sure customs are captured?